Business & Self-EmployedNonprofits501(c)(3)Form 990Churches & Associations

How do you start, run and file for a nonprofit? 501(c)(3)s, churches, associations and foundations explained

Short answer

Form a nonprofit corporation in your state, get an EIN, then file Form 1023 ($600) or 1023-EZ ($275) with the IRS for exemption. Once exempt, file Form 990-N, 990-EZ or 990 by May 15 each year (calendar year), depending on size; three straight years without filing means automatic revocation. Churches are exempt automatically and don't file a 990, but still run payroll for employees.

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$275 / $600
IRS user fee for exemption: Form 1023-EZ / Form 1023, paid when filing online on Pay.gov
$50,000
Two thresholds: organizations with gross receipts normally of $50,000 or less file Form 990-N, and Form 1023-EZ requires receipts of $50,000 or less in each of the past and next 3 years (and assets of $250,000 or less)
May 15
The 990-series deadline for calendar-year organizations (the 15th day of the 5th month after year-end); Form 8868 extends the 990 and 990-EZ by 6 months, but the 990-N can't be extended
3 years
Three consecutive years without a 990-series filing (including the 990-N) means automatic revocation of exemption, with no appeal; you must reapply
01

At a glance

  • Forming a state nonprofit isn't federal exemption. After incorporating, you still apply to the IRS for 501(c)(3) or another exemption before donors can deduct gifts.
  • Pick the right type first: charitable, religious and educational groups are 501(c)(3); member-centered social groups are closer to 501(c)(7); chambers and trade associations are 501(c)(6); community advocacy is 501(c)(4). Gifts to the last three aren't deductible.
  • Small groups use Form 1023-EZ ($275); churches, schools and larger organizations use Form 1023 ($600). File within 27 months of formation and exemption can date back to the start.
  • File every year: receipts of $50,000 or less file the 990-N, larger groups the 990-EZ or 990, and three missed years mean automatic revocation.
  • Keep fund accounting: restricted gifts and grants are tracked separately, and any single gift of $250 or more needs a written acknowledgment for the donor.
02

What kinds of nonprofits are there?

"Nonprofit" is a form under state law; "tax-exempt" is a status under federal tax law. Keep them apart. The most common federal exemption is 501(c)(3), where donors can deduct their gifts. Other 501(c) types are also exempt from income tax, but gifts to them generally aren't deductible.

Figure 1 Common types of exempt organizations

find the row for the organization's main purpose.

TypeWho it fitsGifts deductible?How to apply / annual filing
501(c)(3) public charityCharity, education, religion, culture, disaster relief, heritage-language schools, community serviceYesForm 1023 / 1023-EZ; a 990-series return every year
501(c)(3) private foundationFunded by one family or company, mainly making grantsYes (lower limits)Form 1023; Form 990-PF every year, a 1.39% excise tax on investment income, and roughly 5% of assets distributed each year
Church (including temples, mosques and synagogues)Religious worship and activitiesYesExempt automatically, no application required; no 990
501(c)(4) social welfare organizationCommunity advocacy and civic issuesGenerally noForm 1024-A; a 990-series return every year
501(c)(6) chamber or trade associationChambers of commerce, industry associationsNo (dues may be a business expense)Form 1024; a 990-series return every year
501(c)(7) social clubHometown and alumni associations, sports and hobby clubs centered on membersNoForm 1024; a 990-series return every year; nonmember income may be taxable

Many community groups get this wrong. A hometown or alumni association built around member gatherings, dinners and events is closer to a 501(c)(7), and forcing a 501(c)(3) application invites IRS questions. A group whose main work is charity, education or relief should apply under 501(c)(3) so it can give donors deductible receipts.

Two more options:

  • Fiscal sponsorship: run the project under an existing 501(c)(3), which receives the gifts and issues receipts. It suits new groups that aren't sure yet whether to incorporate.
  • Group exemption: if you're a chapter of a national or state organization, ask the parent first. The chapter may not need its own application.
03

Step 1: form the organization and get an EIN

Form a nonprofit corporation in your state (in North Carolina, Articles of Incorporation on Form N-01 with the Secretary of State), adopt bylaws, get an EIN and open a bank account in the organization's name.

  • Key clauses in the articles: purposes limited to those 501(c)(3) recognizes, and remaining assets going to another 501(c)(3) or the government on dissolution. Without them, the IRS will ask for amendments.
  • Board: at least a board and officers, with minutes of meetings. Form 1023 asks about a conflict-of-interest policy for directors and officers.
  • EIN: apply free with Form SS-4, online. Don't deposit gifts into anyone's personal account.
  • Legal form: a 501(c)(3) can also be an unincorporated association or a trust, but most use a nonprofit corporation for clearer liability protection. An LLC can't use Form 1023-EZ.
04

Step 2: apply to the IRS (Form 1023 or 1023-EZ)

Small, simple organizations can use Form 1023-EZ ($275); churches, schools, hospitals and larger organizations use the full Form 1023 ($600). Both are filed only online on Pay.gov.

Figure 2 Form 1023-EZ or Form 1023?

read from the top; a "yes" to any row means the full Form 1023.

QuestionIf yes
Projected gross receipts over $50,000 in any of the next 3 years?Form 1023
Gross receipts over $50,000 in any of the past 3 years?Form 1023
Assets with a fair market value over $250,000?Form 1023
Applying as a church, school or university, or hospital?Form 1023
An LLC, a supporting organization (509(a)(3)), or formed abroad or using a foreign address?Form 1023
None of the aboveForm 1023-EZ is allowed

Keep in mind:

  • 27 months: file and be approved within 27 months from the end of the month you were formed, and exemption dates back to formation. Later than that, it generally starts when you file.
  • Weekend language schools need a closer look: one applying as a "school," with a regular curriculum, teachers and enrolled students, can't use Form 1023-EZ under the eligibility worksheet.
  • Who doesn't need to apply: qualifying churches are exempt automatically, and organizations with gross receipts normally of $5,000 or less (other than private foundations) needn't file Form 1023. Many still apply, because an IRS determination letter reassures donors, banks and partners.
  • Public support test: a 501(c)(3) public charity must show most of its support comes from the public (generally at least one-third over 5 years). One that relies on a few large donors may be classified as a private foundation, with much stricter rules.
05

Step 3: what do we file every year?

Nearly every exempt organization other than a church files a 990-series return each year, chosen by size. Unrelated business income means a Form 990-T, and employees mean payroll.

Figure 3 Which 990-series return (by annual size)

find the row for the organization's gross receipts and assets.

SizeWhat to fileNotes
Gross receipts normally $50,000 or lessForm 990-N (e-Postcard)A few basic facts online; no extension
Gross receipts under $200,000 and year-end assets under $500,000Form 990-EZForm 8868 extends it 6 months
Gross receipts $200,000 or more, or assets $500,000 or moreForm 990With Schedule A (public support) and others; extension available
Private foundation (any size)Form 990-PF1.39% excise tax on investment income
Unrelated business gross income of $1,000 or moreForm 990-T as wellThat income is taxed at the 21% corporate rate
ChurchNo 990-series returnStill files Form 941 and W-2s for employees
  • Deadline: the 15th day of the 5th month after the fiscal year ends; May 15 for calendar-year organizations.
  • Automatic revocation: three consecutive years without filing (including the 990-N) revokes exemption as of the third year's original due date. There's no appeal; you must reapply, and gifts received while revoked may not be deductible.
  • Public disclosure: the 990 and the exemption application are public and must be provided on request; the donor list (Schedule B) generally isn't.
  • Politics: a 501(c)(3) can't support or oppose any candidate, and lobbying must be an insubstantial part of its activities.
06

Bookkeeping: nonprofit books aren't company books

A nonprofit tracks restricted and unrestricted funds separately and records expenses as program, management and fundraising. That's what makes the 990, board reports and grant reports straightforward.

  • Fund accounting: money a donor or funder designated for a purpose (a scholarship fund, disaster relief, a grant for one program) is recorded and reported on its own and can't be spent on general costs.
  • Functional expenses: the 990 splits expenses into program services, management and general, and fundraising. Coding them that way during the year saves a lot of year-end work.
  • Gift records: donor, amount, date and any restriction for every gift; for in-kind gifts, a description and value.
  • Donor receipts: for any single gift of $250 or more, the donor needs a written acknowledgment stating whether anything was given in return. For a gift over $75 where the donor received something (a dinner or a gift), tell the donor how much is deductible.
  • Volunteer treasurer handoffs: many groups change treasurers every year, with books on a personal laptop or spreadsheet. A shared bookkeeping system, monthly bank reconciliation and two-person approval keep the handoff clean.

On the donor side, 2026 brings changes: people who don't itemize can deduct up to $1,000 of cash gifts a year ($2,000 married filing jointly), and itemizers deduct only gifts above 0.5% of adjusted gross income. Worth mentioning in your year-end appeal.

07

Employees and payroll

  • A 501(c)(3) doesn't pay federal unemployment tax (FUTA, Form 940), but Social Security, Medicare and income tax withholding apply as usual, with Form 941 each quarter and W-2s at year-end.
  • Fees paid to individuals (instructors, designers, performers) generally require a 1099-NEC: for payments from 2026, only when they total $2,000 or more in the year ($600 for 2025 payments).
  • Ministers: ministers are self-employed for Social Security and Medicare, so the church doesn't withhold those taxes. A housing allowance, approved by the board in advance, can be excluded from income tax.
  • Volunteers: reimbursements need receipts. A flat "stipend" per event can look like wages.
08

North Carolina rules

Nonprofits in North Carolina watch three things: a charitable solicitation license or exemption, semiannual sales tax refunds, and collecting sales tax on their own sales. North Carolina nonprofit corporations don't file annual reports with the Secretary of State.

  • Charitable solicitation license: soliciting the public in North Carolina generally requires a license from the Secretary of State's Charities Division, renewed each year, with fees scaled to contributions. Solicitations for religious institutions, and organizations receiving less than $50,000 in contributions a year that pay no officers, directors or solicitors, can apply for exemption, reviewed annually.
  • Sales tax: pay, then claim a refund: North Carolina doesn't let nonprofits buy tax-free, but qualifying organizations (most commonly 501(c)(3)s) can claim back state and local sales tax twice a year. Get a refund account with Form E-585NPA, then file Form E-585: January–June by October 15, July–December by April 15 of the next year; claims more than 3 years late are lost. Electricity, telecommunications, motor vehicles and alcohol don't qualify.
  • Your own sales: fundraising sales of food or goods generally mean registering and collecting sales tax (see our North Carolina sales tax guide).
  • State income tax: organizations exempt federally are generally exempt from North Carolina income tax; unrelated business income may need a state return too.

Other states have their own rules, such as registration with the Attorney General's Registry of Charitable Trusts in California or the CHAR500 in New York. Check the rules wherever you solicit or operate.

09

Key rules at a glance

ItemNumber / deadlineNotesYear
Form 1023-EZ user fee$275Small organizations meeting the receipts and asset limits; filed on Pay.gov2026
Form 1023 user fee$600Churches, schools and larger organizations2026
Retroactive exemption window27 monthsFile and be approved within 27 months of the end of the formation monthCurrent rules
Form 990-NReceipts normally $50,000 or lessNo extension2026
Form 990-EZReceipts under $200,000 and assets under $500,000Form 8868 extends 6 months2026
990-series deadlineMay 15Calendar year; the 15th day of the 5th month after year-end2026
Automatic revocation3 years without filingIncluding the 990-N; no appeal, reapplyCurrent rules
Form 990-TUnrelated gross income of $1,000 or moreTaxed at 21%2026
Private foundation excise tax1.39%Net investment income; Form 990-PF2026
Written acknowledgmentSingle gifts of $250 or moreQuid pro quo gifts over $75 need a disclosure of the deductible amountCurrent rules
North Carolina sales tax refundOct. 15 / Apr. 15Form E-585, for January–June and July–December2026
10

Common mistakes

!

"We incorporated as a nonprofit, so we're tax-exempt."

State incorporation is only the legal form. Whether donors can deduct gifts and whether you're exempt from federal income tax depends on the IRS.

!

"We're too small to file anything."

Small organizations still file the 990-N every year, and three missed years mean automatic revocation.

!

"Every hometown or alumni association should apply as a 501(c)(3)."

Groups centered on members' social activities are closer to 501(c)(7), and gifts to them aren't deductible. The wrong type invites questions and makes later compliance harder.

!

"In North Carolina we just show an exemption certificate at checkout."

North Carolina nonprofits pay sales tax when they buy and claim it back twice a year on Form E-585.

11

Where is your organization now?

Each stage has its own to-do list. The worst gaps are forming without applying, and applying without filing afterward.

  • Situation A: still planning. Settle the type (501(c)(3), (c)(7) or another) and whether to incorporate at all or start under a fiscal sponsor; then incorporate, get an EIN and apply to the IRS within 27 months.
  • Situation B: formed and exempt, but the books are a mess. Set up fund accounting, rebuild gift records and receipts, code expenses the way the 990 needs them, and file the 990 series on time every year.
  • Situation C: years without a 990, or exemption revoked. Check your status on the IRS list of exempt organizations. If not yet revoked, catch up now; if revoked, reconstruct past filings and apply for reinstatement.
  • Situation D: hiring staff, earning business income, growing. Run payroll (no FUTA for a 501(c)(3)), file Form 990-T for unrelated business income, move up to the 990-EZ or 990 at the thresholds, and check the North Carolina solicitation license.
Why YCL

Formation, exemption, the books and the 990, all in one place

We work with churches, community associations, heritage-language schools, parent groups, chambers of commerce and charities. We help you choose the right exemption, handle state formation, the EIN and the IRS application, then set up fund accounting and file the 990 series and payroll each year, along with North Carolina solicitation licensing and sales tax refunds. When a volunteer treasurer changes, the books carry on.

  • Big Four background, 15+ years in U.S. tax, CPAs licensed in multiple states, also credentialed as EA and CAA
  • Formation: North Carolina nonprofit incorporation, key clauses for the articles and bylaws, EIN, Form 1023 / 1023-EZ, solicitation license or exemption
  • Bookkeeping: restricted and unrestricted funds kept apart, gift records and receipts, board-ready financial reports
  • Filings: Forms 990-N, 990-EZ, 990, 990-T and 990-PF, payroll and 1099s, North Carolina E-585 refunds, and reinstatement after revocation

How it works

  1. 1

    Free assessment

    a 15-minute call (yclcpa.com/book) on your mission, size, members and funding, to set the type and the to-do list.

  2. 2

    Formation or catch-up

    new groups get state formation, an EIN and the exemption application; existing groups get an IRS status check and catch-up filings or reinstatement.

  3. 3

    Books

    fund accounting and gift records, with a simple routine for your treasurer or volunteers.

  4. 4

    Annual filings

    the 990 series, payroll and state items on time, with year-end reminders about donor receipts and next year's deadlines.

12

FAQ

How much does the IRS charge to apply for 501(c)(3) status?

The user fee is $275 for Form 1023-EZ and $600 for Form 1023, paid when filing online on Pay.gov. Forming the state nonprofit corporation has its own state fee.

Can our organization use Form 1023-EZ?

Check the eligibility worksheet: receipts of $50,000 or less in each of the past and next 3 years, assets of $250,000 or less, not applying as a church, school or hospital, and not an LLC or a foreign-formed organization. Fail any one and you use the full Form 1023.

Which type should a hometown or alumni association apply for?

One built around member gatherings and events is usually closer to a 501(c)(7) social club, and gifts to it aren't deductible. Only a group whose main work is charity, education, relief or public service fits 501(c)(3).

What happens if we haven't filed a 990 in years?

Three consecutive years without filing (including the 990-N) means automatic revocation, with no appeal; you must reapply. If it hasn't been three years yet, catch up now.

Can YCL help us?

Yes. We handle nonprofit formation, the EIN and the exemption application, set up fund accounting, file the 990 series and payroll each year, and take care of North Carolina solicitation licensing and sales tax refunds. Start with a free 15-minute call (yclcpa.com/book).

Sources

  • IRS: Form 1023 and 1023-EZ, amount of user fee; Instructions for Form 1023-EZ (including the eligibility worksheet)
  • IRS: Organizations not required to file Form 1023; Churches, integrated auxiliaries and conventions or associations of churches
  • IRS: Form 990 series, which forms do exempt organizations file; Annual exempt organization return, due date; Automatic revocation of exemption
  • IRS: Publication 557, Tax-Exempt Status for Your Organization; Publication 1771, Charitable Contributions, Substantiation and Disclosure Requirements
  • IRS: Unrelated business income tax (Form 990-T); Private foundations; Publication 517 (Social Security for members of the clergy)
  • NC Secretary of State: Charitable solicitation licensing and exemptions (G.S. 131F-3)
  • NCDOR: Nonprofit sales and use tax information; Forms E-585 / E-585NPA

Starting a nonprofit, or stuck on the books and the 990?

Book a free 15-minute call. A CPA will tell you which type fits, what you need to file and what needs catching up.

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